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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGgtaaatctttttgtagttcatcaagtttcaagtattatgcacatgacttgctttagtatgtttttttaaatcctataatatgaatattaagtaaagggat...

Basic information

species Glycine max
transcript GLYMA16G22630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22630.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G17640.1 (Arabidopsis thaliana), 5'ss of exon 3
GCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGgtaaatcttt--ttgtagttcatcaagtttcaagtattatgcacatgacttgctttagtatgtttttttaaatcctataatatgaatattaagtaaagggat
|||||||||||||| |||||||||||| |||| ||| | || ||  ||||| || ||||||||| |||||  | | |||| |   |      |  |||   ||||||   ||    |||   || |    | |  |   |  || || | |           
GCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattctttactcgaagttgagaga---cagaacatttctcacatggaatg----agtgacttatgaagagttttcccacttgcatttcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348430|gb|GR852109.1|GR852109
EST:     ATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAG                         GGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAG
genomic: ATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGgtaaatcttt ... tctctgacagGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAG
EST: gi|17022619|gb|BM093653.1|BM093653
EST:     CTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAG                         GGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAG
genomic: CTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGgtaaatcttt ... tctctgacagGGCTACCAGTCTTTGCAAGTATATCGAGTAGCTCATGCTTTGTGGGGCCAG