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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgtatgccctttaagtataggaataggacataatcttcatcctttttgtaagtttggaatttggattatctaataatctaatttgattcattttggtactattttctgaccagGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAG

Basic information

species Glycine max
transcript GLYMA16G22630.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G22630.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G17640.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaacgtatgccctttaagtataggaataggacataatcttcatcctttttgtaagtttggaatttggattatctaataatctaatttgattcattttggtactattttc--tgac---cagGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAG
                                                  |  ||  ||  |  |   | | |  ||  |  | || |   |  ||||  ||    | ||  |||    ||||||||||||||||| |||||||||||| |||| ||| | || ||  ||||| || |||||
-------------------------------------------------gtaaaacattccacctaatactgtaaaaagacatgatctttgttgttttcttatgtatctcaatgatttgcagGCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254348430|gb|GR852109.1|GR852109
EST:     TGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAG                         GCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTA
genomic: TGATGAAGCATGATAAAGGTATCCAGCAATCCATTCGCTTGGATATTCAGgtaacgtatg ... ttctgaccagGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggattatctaataatctaatttgattcattttggtactattttctgaccagGCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAG
                                        ctattttct  CT-rich tract
      attatctaataatcta  TA-rich tract