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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtattattttcctatctgctaatgttgctaatttatgtttgtgattttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG

Basic information

species Glycine max
transcript GLYMA16G21960.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21960.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0044g01940.t01 (Vitis vinifera), 3'ss of exon 6
----gtattattttcctatctgctaatgttgctaatttatgtttgtgattttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG
    | |||    |   |||   |  ||||  | ||   | ||    |||||| ||    ||     ||||  |    || | |||  |   ||| | ||  ||||    |||||||||||||||||||| |||||||| ||    ||| | ||| | || ||| |||||||  ||||  | |  ||||||||||| |||||
acctggattgaactga-atcaagtcctgttattgatgcttattatgcattttg-ctcccaaaaaggttaaataaatcgtttcttttcatt--attgtactacagTCTCGCGTCTATAAGTGGTGGAAACCTGGTGGGAACTTGTACCTGCAATTTTCTAGAGCTATCAAGTTTACCCCCATTTTCTTTTGGGGAATATTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11274206|gb|BF324574.1|BF324574
EST:     TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG                         TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: gi|20497895|gb|BQ272825.1|BQ272825
EST:     GGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG                         TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
genomic: GGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: gi|298194793|gb|HO043265.1|HO043265
EST:     TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG                         TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
EST: gi|7639233|gb|AW733560.1|AW733560
EST:     TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAG                         TCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT
genomic: TAGCAATGGAGAAGGGAAAACCCCTGGTTCCAGTTTTCTGCTTTGGTCAGgtatttattt ... tttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtctattcaatcaaataaactatcaattccctttggtgcaattttgctgtagTCAAATGTCTATAAGTGGTGGAAACCAGGTGGGAAGTTAGTTCTGAATTTTGCGAGGGCTGTCAAGTTCTCCCCAGTATATTTTTGGGGAATTTTTGG
                                            ttttgct  CT-rich tract
      tattcaatcaaataaa  TA-rich tract