1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacttattattattattattattattattattattattattattattattattatgcttttcatgatacacagtttgagtatcttgtttttgtgtttgaataaaaaaatgtcttctccagaagaaaaaaaaaaatttgggtgtgtttcagGTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGAGGATATGAAGGCTTTTCATCCCAGTCGTGCTTATG
species | Glycine max |
transcript | GLYMA16G21960.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGGTGATTCCTGTTGATGAAAAGAGCAAATTCGGTAGAAAATTATCCAG GTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGAEST: gi|27446115|gb|CA953238.1|CA953238
genomic: ATGGTGATTCCTGTTGATGAAAAGAGCAAATTCGGTAGAAAATTATCCAGgtacttatta ... tgtgtttcagGTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGA
EST: ATGGTGATTCCTGTTGATGAAAAGAGCAAATTCGGTAGAAAATTATCCAG GTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGA
genomic: ATGGTGATTCCTGTTGATGAAAAGAGCAAATTCGGTAGAAAATTATCCAGgtacttatta ... tgtgtttcagGTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGA
ttgaataaaaaaatgtcttctccagaagaaaaaaaaaaatttgggtgtgtttcagGTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGAGGATATGAAGGCTTTTCATCCCAGTCGTGCTTATG
agaagaaaaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttattattattattattattattattattattattattattattattattatgcttttcatgatacacagtttgagtatcttgtttttgtgtttgaataaaaaaatgtcttctccagaagaaaaaaaaaaatttgggtgtgtttcagGTACATATGCAAGCACGTTTGCGCTTACTTTCCCATCACGCTTCATGTGGAGGATATGAAGGCTTTTCATCCCAGTCGTGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT