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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtaccactgtttctctgatcttaaatggtgttgtcctttttaggtagagtatagttcatattttatgaagtggatattcgtctgaattagtagatgcaag...

Basic information

species Glycine max
transcript GLYMA16G21620.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 4
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgta--ccactgtttctctgatcttaaatggtgttgtcctttttaggtagagtatagttcatattttatgaagtggatattcgtctgaattagtagatgcaag
|||||| |||||||| ||||| || ||||||||||| |||||||||||| | |||||||| |||||||||||  | || || |||||||| ||||||||||||   || |         |||     || | |  |   || |||    ||  ||    | |  |  |  | |  | ||  |   | ||  ||  |||||  
TCCTGCTCAGAATGTAGAGAGCTCCCACTGCATCACGATGATGGAAGCTGTGAATGATGGGAAGGACCTTCATATCTCAGTCACCATGCCTTCCATTGAGgtaaatcattagcaacaccatccattctgttatgtttgcttgtagtagcagactaagaaagaaatattagactaaacatatg---gtatgggtgcatgcag-

upper sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgta--ccactgtttct----ctgatcttaaatggtgttgtcctttttaggtaga-gtatagttcatattttatgaagtggatattcgtc--tgaattagtagat-gcaag-------------------------------------------
|||||| || ||||| |||||||| || ||||||||||||||||| ||  | ||||||||  | ||| | || ||||| || || ||||| |||||||||||   | ||| | | |    | |  |||     |||  ||  ||   |  |  | ||   |  ||  | | | |   | ||   || |   | ||||  | | | |   |                                           
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag

upper sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S1_155V6.1 (Physcomitrella patens), 5'ss of exon 3
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtac-cact-gtttctctgatcttaaatggtgttgtcctttt---taggtagagtatagttcatattttatgaagtggatattcgtctgaattagtagatgcaag-------------------------------
|||||| |||||||| ||||| || || ||||||||||||||||| ||| ||||||  ||  | ||| | || || || || || ||||| ||||||||||||   ||| | || |   ||    | || | ||      |    || ||  ||| |     |    || | || |  |||||    ||   |  |  ||||                                  
TCCTGCTCAGAATGTTGAGAGCTCACAATGCATCACCATGATGGAGGCTGTCAATGGAGGTCAAGACTTGCATGTCTCTGTTACGATGCCTTCCATTGAGgtatgtacttgatttttcaattaacagtgcttttagatgctgcaataagtgaagtttgcccgactgattttaaaatctatattacagtgctattatgaatgcttatggatatttccattatttatttgttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193654606|gb|FK594822.1|FK594822
EST:     TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtaccactgt ... tggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: gi|7146925|gb|AW508847.1|AW508847
EST:     TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAG                         GTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtaccactgt ... tggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT