1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acctgttttattcttactttaattccttcctttttttcaattgcacccataagcataactagcttcaggataatgataacatcctccttgtggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAATCTCCCGGTGCAAATT
species | Glycine max |
transcript | GLYMA16G21620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAG GTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTEST: gi|7146925|gb|AW508847.1|AW508847
genomic: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtaccactgt ... tggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
EST: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAG GTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
genomic: TCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgtaccactgt ... tggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTT
cccataagcataactagcttcaggataatgataacatcctccttgtggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAATCTCCCGGTGCAAATT
tgataac putative branch site (score: 2)
tcctccttgt CT-rich tract
ataatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctgttttattcttactttaattccttcctttttttcaattgcacccataagcataactagcttcaggataatgataacatcctccttgtggttctcagGTTGGTACTGTTGGAGGCGGCACACAACTCGCATCTCAGTCAGCATGTCTTAATTTACTTGGTGTCAAGGGTGCCAATAAAGAATCTCCCGGTGCAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-cctgttt
- - - - - - - - - - - - ccttcct
- - - - - - - - - - - - - - - - - - - - - -cacccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcag