Sequence
atgc intronic sequence ATGC exonic sequenceGGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGgtaaacatggccctctatatgtgtttttgctacattgttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcag
Basic information
species | Glycine max |
transcript | GLYMA16G21620.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 3
GGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGgtaaa-catggccctctatatgtgtttttgctacatt-gttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcag
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GGTGATGCAATGGGTATGAACATGGTCTCCAAAGGAGTCCAAAACGTCCTGGATTTCCTTCAAACCGATTTCCCTGACATGGATGTCATCGGCATCTCCGgtaaaattttaactggcagaccaattctaccaatgcccgatgcatgctaaagtttgaatccat--ctgaa----tca-atgtt-tttgaatcgccccag
upper sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 3
lower sequence: PP1S1_155V6.1 (Physcomitrella patens), 5'ss of exon 2
GGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGgta---aacatggccctctatatgtgtttttgctacattgttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcag------------------------------------------------------------
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GGTGATGCGATGGGGATGAACATGATATCCAAAGGTGTTCAAAACGTTTTGGATTATCTTCAGGATGTATACCCAGATATGGAGGTCATCAGTGTATCTGgttcgtgacata-ccttgattctttgttcctgatg-attaatccagaacacgg--gattgtagttgcataattttctacaggcatgatagtattagtgcatgcgtagaatctcactagcaagtgggtttacgtgtactaacgtactctgtttgcatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298168675|gb|HO009605.1|HO009605EST: TGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTG GCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGC
genomic: TGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGgtaaacatgg ... tctgtatcagGCAATTTCTGTTCGGACAAGAAAGCCGCAGCCGTGAATTGGATTGAAGGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGATGCCATGGGGATGAACATGGTGTCAAAAGGTGTTCAAAATGTTCTTGATTTTCTTCAGGATGACTTCCCTGATATGGATGTTATTGGAATCTCTGgtaaacatggccctctatatgtgtttttgctacattgttttttgccatggttgaaagcagttgctgaaattgtcacataccctttgttctgtatcag
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