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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactcagatcactgttggatttttgctgcttccgtattcaagacatgttattcgttgctttggaaaattaggaagatattgtttgaaggtgcatga...

Basic information

species Glycine max
transcript GLYMA13G19950.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgaga-ctcagatcactgttggatttttgctgct--tccgtattcaagacatgttattcgttgctttggaaaattaggaagatattgtttgaaggtgcatga
| |||||||| ||| || ||||||| ||||||||||||||  | | ||||||||||||||| || ||  | || ||||| ||||||||||| ||  ||||  || |     |   ||       | |  |||   ||| | |    ||| |   ||  | | |    | ||    |||   | |  ||   |    ||   
AATACAAGGTCCACTCACACAACAGGAATGGTCTTTGCGCAGTTGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcctttgttcttgacattcctgtattgcatatccttgtatttgacctaggatcagattcacaagcaataagggattgtctccttgctattctca---

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G387076_T02 (Zea mays), 5'ss of exon 3
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactcagatcactgttggatttttgctg--cttccgtattcaagacatgttattcgttgct--ttggaaaat-taggaagatattgtttgaaggtgcatga
| |||||||| ||| |  |||| |||||||| ||||| ||| | | ||| |||||||||||||| ||| | |||||||| ||||||||||| || |||||   | || | |  |   | || |    ||   |||  |  ||      | |      ||| |   ||| ||  | |||  ||  | | ||| |   ||     
AATACAAGGTCCACTCCCACAATAGAAATGGGCTTTGTGCGGTTGCATTCATGGATGATCATTATCCGGTACGGAGTGCATTTTCTCTTCTGAATCAGgtaccaatc-gttatcccctagactcccacttgccttttgcttttggtttaagcc-caggttaccaattgtaagctgtagccagtcact-tttcattctgttc--

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtga-gactcagatcactgttggatttttgc-tgcttccgtattcaagacatgtta--ttcgttgctttggaaaattaggaagatattgtttgaaggtgcatga
| || ||||| ||| |  ||||||||||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| || |||||   |||   |||  |||   ||||    | ||  |  |  ||      | |||   ||      ||   |    |||  ||  |||  |          |  
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctg--agattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct--

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58060.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactcagatcactgttggatttttgctgcttccgtattcaagacatgttattcgttgctttggaaaattaggaa---gatattgtttgaaggtgcatga
|||||||||| ||| | ||||| |||||||| ||||||||| |||| || ||||| |||||||||||  |||| ||||| || ||||||||||| ||||| | |     || | ||||| |  |  | |      | ||       | ||| | |  |  |||||     | |  |    || |||| | |          
AGTACAAGGTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCTGTTCGAAGTGCTTTCTCTCTTCTCAATCAGgtaatatc---atta-tgttgaaagtg-gttctcaatgcatcattcgtaagttttcctgtaatttgggttgcttgacatttaattttgtctcag---------

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G58060.2 (Arabidopsis thaliana), 5'ss of exon 3
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactcagatcactgttggatttttgctgcttccgtattcaagacatgttattcgttgctttggaaaattaggaa---gatattgtttgaaggtgcatga
        || ||| | ||||| |||||||| ||||||||| |||| || ||||| |||||||||||  |||| ||||| || ||||||||||| ||||| | |     || | ||||| |  |  | |      | ||       | ||| | |  |  |||||     | |  |    || |||| | |          
--------GTTCACGCTTACAATAGAAATGGCCTTTGCGCGGTGGGTTTCATGGACGATCATTACCCTGTTCGAAGTGCTTTCTCTCTTCTCAATCAGgtaatatc---atta-tgttgaaagtg-gttctcaatgcatcattcgtaagttttcctgtaatttgggttgcttgacatttaattttgtctcag---------

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 5'ss of exon 2
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactcagatcactgttggatttttgctgcttccgtattcaagacatgttat---tcgttgctttggaaaattaggaagatattgtttgaaggtgcatga
| || || |||||  | |||||||||||||||||||| ||  |||| ||||||||||| || || ||  |||| || || |||||  | ||||||||||| | || || ||   | | |  ||  ||    |    | ||||| | |  ||     |  ||| | ||| | | |       | |||||| |||        
AATATAAAGTGCATTCTTACAACAGAAATGGTCTTTGTGCACTGGGTTTTATGGATGACCACTATCCTGTTCGAAGCGCATTTTCCTTGCTCAACCAGgtaa-accca-atttttatggctttactgtctttgtttttttcaaaagaaatttcagataattgatctggcatactttatttcttttgttttaagtcaacca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168422|gb|HO009352.1|HO009352
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192306907|gb|FK002629.1|FK002629
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192299559|gb|FG987720.1|FG987720
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|151393215|gb|EV263090.1|EV263090
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192306908|gb|FK002630.1|FK002630
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|151407036|gb|EV275591.1|EV275591
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298197444|gb|HO044923.1|HO044923
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|213611777|gb|DB964781.1|DB964781
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|192294833|gb|FG987522.1|FG987522
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG
EST: gi|298179750|gb|HO024965.1|HO024965
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCA
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAA-CTTTGGCGAGTCATGGAGAAATGCTCA
EST: gi|213602294|gb|DB958554.1|DB958554
EST:     TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG                         GTAATAGATGAATATCNNNNNNNCTTTGGCGAGTCATGGAGAAATGCTCAG
genomic: TTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtgagactca ... tgtcatgcagGTAATAGATGAATATCAAAAAAACTTTGGCGAGTCATGGAGAAATGCTCAG