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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCCAGCGTTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttcatagggtttctttcttgcgcaatttgggttattttcatgtagtttttgttgattcagatggacttcgtaccgcttttttttttgttcacc...

Basic information

species Glycine max
transcript GLYMA13G19950.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 5'ss of exon 1
TACTTCCAGCGTTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttcttt-ttcatagggtttct------ttcttgcgcaatttgggttattttcatgtagtttttgttgattcagat--ggacttcgtaccgcttttttttttgttcacc
| |||||||||   |  ||    ||||||||||||||||||||  |||||||||||||  |||||||  |  ||||| ||||| ||||| || |||||||||        ||| |   | ||      | | | |||| || |||||   ||  | |       | ||  ||||||  || ||||  |  |  ||   ||         
TTCTTCCAGCGGGGCGCCGCGCGGGAGTTCATCGTCTTCGTCGCGCGCACCGTCGCCCAGCGCACCCAGCCAGGCCAGCGCCAGTCCGTCCAGCACGAAGgtaaacaacccatcgtcctcctcagatctgcctccgcacttagggtttgcttgctttctgacccgatg-ctcagatccggtcttcacatggacttggatta--------

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G58060.2 (Arabidopsis thaliana), 5'ss of exon 1
TACTTCCAGCGTTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttcatagggtttctttcttgcgcaatttgggttattttcatgtagtttttgtt--gattcagatgga--cttcgtaccgcttttttttttgttcacc-----------------------------------------------
|| |||||||| || ||||||||||||||| ||||||| ||||||||||| |||||  | || |||||||    ||||||||| || || |||||||||||||||| | | |    ||  | |    | | |  | | || ||||||  |  | ||| |   |  ||  ||| |  || | | || ||||  ||||| |||                                                  
TATTTCCAGCGATCTAGCGTCAAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCTAGCCGAACCCCTCCTTCCCAACGCCAGTCTGTTCAACACGAAGgttcttctcctt---cttcttctacctctctagatcgattgttttcaaatcttctttctcccggatctaatgcaatctcctttcctctttgatttttattcgatttctaaattcggatcggcttttcgattttgaaacttttatgatttag

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G58060.1 (Arabidopsis thaliana), 5'ss of exon 1
TACTTCCAGCGTTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttcatagggtttctttcttgcgcaatttgggttattttcatgtagtttttgtt--gattcagatgga--cttcgtaccgcttttttttttgttcacc
|| |||||||| || ||||||||||||||| ||||||| ||||||||||| |||||  | || |||||||    ||||||||| || || |||||||||||||||| | | |    ||  | |    | | |  | | || ||||||  |  | ||| |   |  ||  ||| |  || | | || ||||  ||||| |||   
TATTTCCAGCGATCTAGCGTCAAGGAGTTCGTCGTCTTTGTCGGTCGCACTGTCGCTAGCCGAACCCCTCCTTCCCAACGCCAGTCTGTTCAACACGAAGgttcttctcctt---cttcttctacctctctagatcgattgttttcaaatcttctttctcccggatctaatgcaatctcctttcctctttgatttttattcga-

upper sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 5'ss of exon 1
TACTTCCAGCGTTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttcatagggtttctttcttgcgcaatttgggttatttt-catg-tagtttttgttgattcagatggacttcgtaccgcttttttttttgttcacc
||||| ||| | |||||||||||||| || ||||| ||||| ||||| || || |||    | || ||||     |||||||||||||| |||||||||||||| || || |    ||   |    |  | |  |   ||||||| |||  |  | | ||||   | |    ||  ||  ||   |      |    | |  
TACTTTCAGAGATCCAGCGTCAAGGAATTTATCGTTTTCGTGGGTCGGACAGTTGCCAAAAGGACTCCTCCCTCTCAACGCCAATCCGTCCAACACGAAGgttccttctc-tccccttaaatcagggttccagctcctttattttgcataattctgtctgtttggttaccgagaaatcaaacttataggaaatcaaatgaa-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298168422|gb|HO009352.1|HO009352
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|192306907|gb|FK002629.1|FK002629
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|192299559|gb|FG987720.1|FG987720
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|298186143|gb|HO036776.1|HO036776
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAGGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|151393215|gb|EV263090.1|EV263090
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|193481169|gb|FK444832.1|FK444832
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAA-TGGTCTT
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTT
EST: gi|151407036|gb|EV275591.1|EV275591
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|298197444|gb|HO044923.1|HO044923
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|213611777|gb|DB964781.1|DB964781
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|192294833|gb|FG987522.1|FG987522
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|298179750|gb|HO024965.1|HO024965
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
EST: gi|213602294|gb|DB958554.1|DB958554
EST:     CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAG                         AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA
genomic: CGTCGCCCGTCGCACCCCTCAGGGCCAACGCCAATCCGTACAACACGAAGgttctttttc ... ctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTA