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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGgtgagctatcatgagtttgaaataactgacctcatcaagtaggataagacttttgttgttgttgttgtgtcgtgagtctgaaatagttcaaaatagcattcccatgtatttgttagtttaaacttggaaagcattgccttataatgttgtgctgtggaacag

Basic information

species Glycine max
transcript GLYMA12G08870.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 3
---GTAGTGGGACATCAGGCTATTATGTCTCAGACTTGATGCATTTTGCTGGTATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGgtgagctatcatgagtttgaaataactgacctcatcaagtaggataagacttttgttgttgttgttgtgtcgtgagtctgaaatagttcaaaatagcattcccatgtatttgttagtttaaacttggaaagcattgccttataatgttgtgctgtggaacag
   | ||||||||||||||||||||||| ||||| ||| || |||||| ||  ||| |||   || | |     || |||||||| || ||  | || ||||||||||||| ||||| | ||  | | ||         |  |  |||   | || |||| || |||   | | |    |||      |||   ||   ||||   || |   || | | |||   |  || ||                               
ATGGCAGTGGGACATCAGGCTATTATGTATCAGATTTGTTGAATTTTGATGCGATTGTTG---GATCATCTGTGACTAATTCTTCAGCTTCAATTGTCTTTGGgtgagctaccatgaatctgtcaaacct----ctgagagtttagatggcagttatgttatt-ttggccttttgctcttctt-----gtttggaact-catt--gatttgggtgatgggtta---tgagacag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732828|gb|BM527273.1|BM527273
EST:     ATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGG                         TTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGA
genomic: ATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGgtgagctatc ... tgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGA