Sequence
atgc intronic sequence ATGC exonic sequence...tctcaattcaatgatttcttatttggaaaaaggaatatatatatatatatatatatatatatatatatatatatattaaaaattttggcttcttccacagGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGC
Basic information
species | Glycine max |
transcript | GLYMA12G08870.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08870.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G08210.1 (Arabidopsis thaliana), 3'ss of exon 1
---tctcaattcaatgatttcttatttggaaaaaggaatatatatatatatatatatatatatatatatatatatatattaaaaattttggcttcttccacagGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGC
| | || | | || || || || || | |||| | | | | | || ||| ||| | ||| ||| | | ||||||||||||| |||||||| ||| | || || || ||||| ||||| |||| || ||||||||||| ||||||||| | |||||||| || ||||||
accttctagactgttgtctcatcatgtgttcaattacgaatttagagatatttgactct-tgttcccattcctatttat--agaatcttgctgttatttacagGCTTTACTACACAAAGGTTAAACTTGGGACACCACCAAGAGAATTTAATGTTCAAATTGACACTGGAAGTGATGTTTTGTGGGTTAGCTGCACTTCCTGC
upper sequence: GLYMA12G08870.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 3'ss of exon 1
tctcaattcaatgatttcttatttggaaaaaggaatatatatata-tatatatatatatatatatat---atatatatattaaaa------attttggcttcttccacagGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGC
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----------gtagtttctttatgggattgatgggtatatatctcctctgtgtttgattaattacagttaatgttttgattgtaatgtttaatttttggttttggtatagGCTTTATTTTACAAGAGTGCTTTTGGGTTCTCCTCCAAAAGAATTCTATGTTCAGATTGACACGGGAAGCGATGTATTGTGGGTCAGTTGCGGTTCTTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatatatatatatatatatatatatatatattaaaaattttggcttcttccacagGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGC
ttttggcttcttcc CT-rich tract
atatatatatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctcaattcaatgatttcttatttggaaaaaggaatatatatatatatatatatatatatatatatatatatatattaaaaattttggcttcttccacagGCTTTACTATACAAAGGTGAAATTGGGTACTCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- -caattca
- - - - - - - - - - - - -gaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attaaaaa