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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctatcatgagtttgaaataactgacctcatcaagtaggataagacttttgttgttgttgttgtgtcgtgagtctgaaatagttcaaaatagcattcccatgtatttgttagtttaaacttggaaagcattgccttataatgttgtgctgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTC

Basic information

species Glycine max
transcript GLYMA12G08870.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08870.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagctatcatgagtttgaaataactgacctcatcaagtaggataagacttttgttgttgttgttgtgtcgtgagtctgaaatagttcaaaatagcattcccatgtatttgttagtttaaacttggaaagcattgccttataatgttgtgctgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTC
                                                         ||   | |  |   | || ||     |  |||| | |  |||    |||      |    || |  |||        |   |   | |||| | ||| | | |||||| |||| |   ||||| || || |||   |||||||| ||||| |||||||| || ||||| |||||||| || || |||||||||||||| || || 
---------------------------------------------------------gtgagtttatttcagcgaatcctt--tgtttcatagt--catcaatatgggccattactcttgactttgttggttgctatgtgggattgtttttctg-gaaccagTTGCAGCACCTCTCAGACGGGAGATTTAGTGAAGTCTGATAGAGCGGTTGATGGAATCTTCGGGTTTGGGCAGCAAGGAATGTCTGTCATTTCTCAGCTT

upper sequence: GLYMA12G08870.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 3'ss of exon 3
gtgagctatcatgagtttgaaataactgacctcatcaagtaggataagacttttgttgttgttgttgtgtcgtgagtctgaaa---tagttcaaaatagcattcccatgtatttgt-tagtttaaacttggaaagcattgccttataatgttgtgctgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTC
                                                   |  | |    |   | ||||     ||||| |   ||| |   | |    ||    ||   || |    ||     ||||||  |||||  ||    || || | | ||  |||| |||||||||   |||||||||||||| |||||||| ||  | |||||||||||||| || || ||||| |||||||  |||||||| || || ||| | 
--------------------------------------------------gtgagctaccatgaatctgtcaaacctctgagagtttagatggcagttatgttattttggccttttgctcttcttgtttggaactcattgatttg-ggtgatgggttatgagacagGTGTAGCATCTCACAGACTGGGGACTTGACAAAGTCAGACCGGGCAGTTGATGGGATTTTTGGGTTTGGTCAACAGGATATGTCTGTTATCTCACAAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732828|gb|BM527273.1|BM527273
EST:     ATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGG                         TTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGA
genomic: ATTTTTGAGGGAACCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGgtgagctatc ... tgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgttagtttaaacttggaaagcattgccttataatgttgtgctgtggaacagTTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTCGGATTTGGGCAACAGGGCATGTCTGTCATTTCCCAACTC
     ttagtttaaa  TA-rich tract