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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTgtgagtatcacctacactacactgaagggacatagagaataacgtgtaaataaggattccttgtacttatgaaataaggcttctttacagagcaggtcca...

Basic information

species Glycine max
transcript GLYMA12G08870.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 9
ACCTCGTATTAAAAGACAAAATTTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTgtgagtatcacctacactacactgaagggacatagagaataacgtgtaa--ataaggattccttgtacttatgaaataaggcttctttacagagcaggtcca
| || ||  ||||||||||||| ||||| || ||| | ||||||||||| |||||||||||||||||||| ||| ||| ||| | |  || |     |||  | ||   |  |      ||  || | ||   ||   | |||  || | |   | | ||||            
ATCTTGTTCTAAAAGACAAAATCTTTGTTTATGATTTAGCTGGTCAACGGATTGGATGGGCTAACTATGACTgtaagtttcaacaatcctgcttcagaggagcttaacaatgagttaacaatcatgatgaaaactaacagttagtaattgaatttacattactag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31311030|gb|CD396233.1|CD396233
EST:     TTTGGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATT                         GTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGT
genomic: TTTTGTCTACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTgtgagtatca ... attaatatagGTTCATTGCCGGTTAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGT