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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAgtaaatttaatttccctgctccctattaattagttagttatagttaattcagtactcagtttttatgacaatttgatcaatgtacttttgggatatgtgaatactaattgagtatcaccattgctggatttggttgcag

Basic information

species Glycine max
transcript GLYMA12G08870.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCTCCAAGGGAATTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAgtaaa---tttaatttccctgctccctattaattagttagttatagttaattcagtactcagtttttatgacaatttgatcaatgtacttttgggatatgtgaatactaattgagtatcaccattgctggatttggttgcag
||||||||| || || ||||| ||| |||| || || ||||||||| | |||||||||||||  || || || || |||||||| || ||||| |||||||||||   ||| | |||  ||   | || |  |    |||||||  ||  |   ||  |   || |||     || ||||   | |   ||| | |                                              
TCCTCCAAGAGATTTTTATGTACAGGTTGATACAGGAAGTGATGTTTTGTGGGTTAGTTGTGCTTCTTGTAATGGCTGTCCTCAAACCAGTGGACTCCAAgtaaagcttttgaattctttgt--cataatcttggtctagttatgatttctgtggttttggattgtta-----atatgatgcttctttcttttgcag---------------------------------------------