Sequence
atgc intronic sequence ATGC exonic sequenceTCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgtacgttcatttgttagagtatgctacatttcaatttctttatatcgattatttatttgtggttttctcatgtgctatatacatgctgctcatcggctga...
Basic information
species | Glycine max |
transcript | GLYMA12G08870.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G133029_T01 (Zea mays), 5'ss of exon 4
TCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgtacgttcatttgttagag---tatgctacatttcaatttctttatatcgattatttatttgtggttttctcatgtgctatatacatgctgctcatcggctga
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TCTCTCATTGCCTGAAAGGTTCGGATAATGGTGGTGGCATTCTTGTGCTTGGTGAAATTGTGGAGCCAGGATTAGTGTATACTCCACTTGTTCCATCACAgtaagtttctttccttggaatttcttttgggtgtaaaacttcacaaatctgcatgctatcttatgtttcagcac-cattctactgcgactgttgtgatatt--
upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgta--cgttcatttgt---tagagtatgctacatttcaatttctttatatcgattatttatttgtggttttctcatgtgc-------tatatacat-gctgctcatcggctga------------------------------------------------
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TCTCTCACTGCTTGAAAGGAGAGAATGGAGGCGGAGGCATATTGGTTCTTGGAGAGATTGTGGAGCCAAACATGGTCTTTACTCCACTTGTTCCCTCACAgtgagtgttcatttatccctcgaaaccgtttcattttaaatagttgtt--caaatgttcattagagagtgactgataagcatgatcttatttaaatagttgctcaaatgttcattagagattgactgataagcatgatcttatggcgtgttaaaatgtcag
upper sequence: GLYMA12G08870.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 4
TCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgtacgttcatttgttagagtatgctacatttcaatttctttatatcgattatttatttgtggttttctcatgtgctatatacatgctgctcat-cggctga-
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TTTCACATTGCTTGAAAGGAGATGGTGGTGGCGGTGGTATATTGGTTCTTGGCGAGATTGTGGAGGAAGATATAGTTTATAGTCCACTTGTGCCTTCACAgtaagttttttttctctttagaatgaaaatgcaact-cttattttaggtttcatgtcctcagtaaaatt-tgacctttttgattgttaatagtacatttggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18732828|gb|BM527273.1|BM527273EST: GGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACA GCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGT
genomic: GGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgtacgttcat ... aatatttcagGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCCCATTGCCTGAAAGGAGATAATAGTGGTGGGGGCGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCAATCACAgtacgttcatttgttagagtatgctacatttcaatttctttatatcgattatttatttgtggttttctcatgtgctatatacatgctgctcatcggctga
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