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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacgaaggacatggaaacacattcccactttattgtttgcaaatacagatgaattttgccacacacggcagaattagttgggttttgctgcccgacctgttttataaattgggggatctcacatgtttgaaacttccattgtatgtaatatatatgtttattactaatacacgccttggacttataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG

Basic information

species Glycine max
transcript GLYMA12G08830.1
intron # 23
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336220|gb|CO980086.1|CO980086
EST:     TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAG                         GCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
genomic: TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGgtaagcaacg ... tataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
EST: gi|42722693|gb|CK768592.1|CK768592
EST:     TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAG                         GCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
genomic: TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGgtaagcaacg ... tataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
EST: gi|58014856|gb|CX701598.1|CX701598
EST:     TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAG                         GCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
genomic: TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGgtaagcaacg ... tataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
EST: gi|42722559|gb|CK768458.1|CK768458
EST:     TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAG                         GCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
genomic: TGGCGCTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATCAAGgtaagcaacg ... tataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatgtaatatatatgtttattactaatacacgccttggacttataaaccagGCTTACTACCTTCCCGAGACAGAATATGTGCACTGGGCACGAGCACACCCG
                        tactaat  putative branch site (score: 1)
     atgtaatatatatgtt  TA-rich tract