1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgaattgtttttcccatatttatttcatatctgtgatttgaagtctgattgattaattgctctatgatatattgtccattttctgtgattcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAGTGAGG
species | Glycine max |
transcript | GLYMA12G08670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG GGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAEST: gi|151399558|gb|EV269429.1|EV269429
genomic: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGgtacaatctt ... tcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
EST: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG GGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAEST: gi|19452866|gb|BM954276.1|BM954276
genomic: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGgtacaatctt ... tcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
EST: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG GGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAEST: gi|208123185|gb|GD922267.1|GD922267
genomic: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGgtacaatctt ... tcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
EST: GACATAATCAAGGCACAACTTCAAAG GGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAEST: gi|207746745|gb|GD719296.1|GD719296
genomic: GACATAATCAAGGCACAACTTCAAAGgtacaatctt ... tcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
EST: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG GGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
genomic: TGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGgtacaatctt ... tcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGA
ctgattgattaattgctctatgatatattgtccattttctgtgattcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAGTGAGG
gattaat putative branch site (score: 3)
ttcatttct putative PPT
tatgatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattgtttttcccatatttatttcatatctgtgatttgaagtctgattgattaattgctctatgatatattgtccattttctgtgattcatttctagGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - tttccca
- - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - -ctgattg