1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgcagtgagtgacatataaaacttgttgtttgccacagttttggactgagtttcccttgcattgtcttttgaactcttcattttaaccttctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
species | Glycine max |
transcript | GLYMA12G08670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAA GGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGEST: gi|23063991|gb|BU578764.1|BU578764
genomic: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAgtaatgtata ... ctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
EST: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAA GGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGEST: gi|151399558|gb|EV269429.1|EV269429
genomic: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAgtaatgtata ... ctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
EST: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAA GGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGEST: gi|13181262|gb|BG352602.1|BG352602
genomic: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAgtaatgtata ... ctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
EST: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAA GGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGEST: gi|7796407|gb|AW781804.1|AW781804
genomic: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAgtaatgtata ... ctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
EST: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAA GGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
genomic: TACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAgtaatgtata ... ctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
ctgagtttcccttgcattgtcttttgaactcttcattttaaccttctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
ttttaac putative branch site (score: 2)
ctcttcattttaacct CT-rich tract
ttcattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcagtgagtgacatataaaacttgttgtttgccacagttttggactgagtttcccttgcattgtcttttgaactcttcattttaaccttctctccccagGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - -tgagtga
- - - - - - - - - - -cttgttg
- - - - - - - - - - - - - - - tgccaca
- - - - - - - - - - - - - - - - - - - - - - -ctgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccttgca