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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTTCACCGGTAACTCGAAGGCTCCTATTACTCAATTCCCCAACAAAAGTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaacattctatcctctaacgccataaatcaaacattttccgtgtttttcatcattacttggatgtaaattttgaattttgtagcttcacagcaagtgggtacacttggttttttctatggtgtaatgtatttgcactttgcagcatgtatgtgtgtatatattcacttggtttaactatctgtgaaatcag

Basic information

species Glycine max
transcript GLYMA12G08670.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687696|gb|BF595372.1|BF595372
EST:     GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAA-GGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCT
EST: gi|23063991|gb|BU578764.1|BU578764
EST:     GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|151399558|gb|EV269429.1|EV269429
EST:     GTGCGCGCTTCTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|13181262|gb|BG352602.1|BG352602
EST:     GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
EST: gi|298189820|gb|HO038223.1|HO038223
EST:     GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGAAGATGTGACTGATGT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAAGGAAGATGTGACTGATGT
EST: gi|7796407|gb|AW781804.1|AW781804
EST:     GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAG                         ATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT
genomic: GTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaa ... gtgaaatcagATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGTTTCACCGGTAACTCGAAGGCTCCTATTACTCAATTCCCCAACAAAAGTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGgttgcatcaacattctatcctctaacgccataaatcaaacattttccgtgtttttcatcattacttggatgtaaattttgaattttgtagcttcacagcaagtgggtacacttggttttttctatggtgtaatgtatttgcactttgcagcatgtatgtgtgtatatattcacttggtttaactatctgtgaaatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA