1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacgctcgctggctactcgcatgattataaacttgcttttggaatttggttattgtatgttgctaaatacgttgtcttataatggaaacaatacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGCAACATACCCCTCAAGGTCAATGTATGTGTACGGGTCAATATGGGATGCA
species | Glycine max |
transcript | GLYMA12G08520.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATAAT ATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGCEST: gi|21677152|gb|BQ629503.1|BQ629503
genomic: CAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATAATgtaatgtttt ... atacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGC
EST: ACACAGGATTTTCACAACTATGGCATTCTATTTATATCCAGTGAGATAAT ATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGCEST: gi|151411827|gb|EV281638.1|EV281638
genomic: ACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATAATgtaatgtttt ... atacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGC
EST: ACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATAAT ATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGC
genomic: ACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCAGTGAGATAATgtaatgtttt ... atacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGC
ttggttattgtatgttgctaaatacgttgtcttataatggaaacaatacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGCAACATACCCCTCAAGGTCAATGTATGTGTACGGGTCAATATGGGATGCA
tgctaaa putative branch site (score: 2)
tcttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacgctcgctggctactcgcatgattataaacttgcttttggaatttggttattgtatgttgctaaatacgttgtcttataatggaaacaatacgtgcagATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCTAGGAAAAGTGAAGCAACATACCCCTCAAGGTCAATGTATGTGTACGGGTCAATATGGGATGCA
cacgctc
- - - - -tggctac
- - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct