1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttggcatccaaacatgcacttagtcatttgttaacactccattcttcactgttacttccttagaccatactcttgctaagacattttttttgtaacacagGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCATTATA
species | Glycine max |
transcript | GLYMA12G08520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGGCTAGACCAAGGCTCATTGACAATCTGGCTTGACTCTAACTCAG GAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGEST: gi|4295415|gb|AI442330.1|AI442330
genomic: TCAGAGGCTAGACCAAGGCTCATTGACAATCTGGCTTGACTCTAACTCAGgtattccaat ... tgtaacacagGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTG
EST: TCAGAGGCTAGACCAAGGCTCATTGACAATCTGGCTTGACTCTAACTCAA GAAGTGGATTCA-GTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTG
genomic: TCAGAGGCTAGACCAAGGCTCATTGACAATCTGGCTTGACTCTAACTCAGgtattccaat ... tgtaacacagGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTG
tcactgttacttccttagaccatactcttgctaagacattttttttgtaacacagGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCATTATA
ttgtaac putative branch site (score: 2)
catttttttt CT-rich tract
taagacatttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcatccaaacatgcacttagtcatttgttaacactccattcttcactgttacttccttagaccatactcttgctaagacattttttttgtaacacagGAAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCATTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -ccaaaca
- - - - - - - tgcactt
- - - - - - - - - - - - - - - - - cactcca
- - - - - - - - - - - - - - - - - - - - - tcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctaag