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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaattagtctacaacttcagataatgttaaaaattgaatctcttctttcaagttcaaattttgatcaccttttttctgaattttttttgtgaattgcagCTTTCAAACAACCAAGACCACCCCGGAAACCATGATGAAATTGACATTGAGTTCCTTGGCACCACACCTGATAAGCCATATGTCTTGCAAACAAATGTAT

Basic information

species Glycine max
transcript GLYMA12G08520.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4397426|gb|AI496423.1|AI496423
EST:     CCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCATTATAT                         CTTTCAAACAACCAAGACCACCCCGNGAA-CCATGATGAAATTGACATTGA
genomic: CCATTAAGCTTCAACCTGGTTACACTGCAGGAGTCATTACATCATTATATgtgagaatta ... tgaattgcagCTTTCAAACAACCAAGACCACCCCG-GAAACCATGATGAAATTGACATTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcaagttcaaattttgatcaccttttttctgaattttttttgtgaattgcagCTTTCAAACAACCAAGACCACCCCGGAAACCATGATGAAATTGACATTGAGTTCCTTGGCACCACACCTGATAAGCCATATGTCTTGCAAACAAATGTAT
              ttttgat  putative branch site (score: 4)
 ttttttttgt  putative PPT
 ttttttctgaattttt  TA-rich tract