Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTGgtttgatttgaaattttttagccatcctcattgacatttgtgttatatatttttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatctttggtgattctgtctggatgtgaatgatagtaaatagtatcttacttggaaatcaattttttttag
Basic information
species | Glycine max |
transcript | GLYMA12G08490.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 7
TTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTGgtttgatttgaaattttttagccatcctcattgacatttg--tgttatat-atttttatttatttatttattttaaattctttctatattttttaattgtcat-tgtacttatctttggtgattctgtctggatgtgaatgatagtaaatagtatcttacttggaaatcaattttttttag
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------TGTGATGTAGTTTCAACAGATCAAACTGAAGTTTTGCCATTACTAATGAGAAATGTTGAACGTAATACTTCAAGGATCATGCAGATGAATCCTGGTTCAGgtgcaa---ttctaaccatcaccaatcccttcaagtcgatgaatgatttatttttagttcctttttaaaggttatttttctttttctttcttttctcctgtac------------------------------------------------------------------------
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 7
TTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTGgtttgatttgaaattttttagccatcctcattgacatttgtgttatatatt-tttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatctttggtgattctgtctggatgtgaatgatagtaaatagtatcttacttggaaatcaattttttttag
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------TGTGATGTAGTTTCAACAGATCAAACTGAAGTTTTGCCATTACTAATGAGAAATGTTGAACGTAATACTTCAAGGATCATGCAGATGAATCCTGGTTCAGgtgcaa---ttctaaccatcaccaatcccttcaagtccatgaataatttatttttagttcctttttaaaggttatttttctttttctctttcttttctactgt---------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213618377|gb|DB969375.1|DB969375EST: ACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTG AGTCATTTGGTTCGAT
genomic: ACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTGgtttgatttg ... ttttttttagAGTCATTTGGTTCGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTTTGCCATTGTTACAGAGAAATGTTGAGCGTAATATTTCAAGGATCACGCAAAAGAATCCTGgtttgatttgaaattttttagccatcctcattgacatttgtgttatatatttttatttatttatttattttaaattctttctatattttttaattgtcattgtacttatctttggtgattctgtctggatgtgaatgatagtaaatagtatcttacttggaaatcaattttttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA