Sequence
atgc intronic sequence ATGC exonic sequenceGAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttataaaactattgttaaacatttgtttattgaatcaatttacttttcctatatgcacttcttgttgaaattggtctatctttaccctactttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcag
Basic information
species | Glycine max |
transcript | GLYMA12G08490.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g57330.1 (Oryza sativa), 5'ss of exon 4
GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagtta--taaaactattgttaaacatttgtttattgaatcaatttacttttcctatatgcacttcttgttgaaattg-gtctatctttaccctactttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcag
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GAAAAGAATAGCAGAAAAGGTAGATTTTCTCCATCTAAACTGAAAGGAAAAAGGGTGATTGAGCTAGGAGCTGGTTGTGGTCTAGCTGGGCTTGgtaagatgggtcgaattaccttcagagat--actatctgaatc--------ttgatggtgctcgcccaataacaaaattgcgcttctccccag------------------------------------------------------------
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 5'ss of exon 3
------GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagtta--taaaactattgttaaacatttgtttattgaatcaatttacttttcctatatgcacttcttgttgaaattg-gtctatctttaccctactttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcag
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GTCCAGGAAAAGAATAGCAGAAAAGGTAGATTTTCTCCATCTAAACTGAAAGGAAAAAGGGTGATTGAGCTAGGAGCTGGTTGTGGTCTAGCTGGGCTTGgtaagatgggtcgaattaccttcagagat--actatctgaatc--------ttgatggtgctcgcccaataacaaaattgcgcttctccccag------------------------------------------------------------
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 5'ss of exon 6
GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttataaa-actattgttaaacatttgtttattg--aatcaatttacttttccta-tatgcacttcttgttgaaattg-------gtctatctttaccctactttcagtacttaggttgg-tgggtgatgcctagtctgatttgcagttccattgcag--------------------------
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GAGAGGAATTGCAGAAAGGGAAGGTTTAGCCCATCTAAATTGAAAGGAAAACGTGTTATTGAACTTGGAGCAGGTTGTGGAGTAGCTGGATTTGgtgagttgcctctacttttgtttaattttccatgggtgtcatttagatgatggccagtggtatgcgttttattttgcatgtgtgtatgtgtgtgtttttcctccccttttggggcatgaactggctctaatatactggaatttatcaggtaaggcactacttaatatgacattggctgttttttttag
upper sequence: GLYMA12G08490.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 5'ss of exon 6
GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttataaa-actattgttaaacatttgtttattg--aatcaatttacttttccta-tatgcacttcttgttgaaattg---------gtctatctttaccctactttcagtacttaggttgg-tgggtgatgcctagtctgatttgcagttccattgcag--------------------------
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GAGAGGAATTGCAGAAAGGGAAGGTTTAGCCCATCTAAATTGAAAGGAAAACGTGTTATTGAACTTGGAGCAGGTTGTGGAGTAGCTGGATTTGgtgagttacctctacttttgtttaattttccatgagtgtcatttagatgatggccagtggtatgcgttttattttgcatgtgtatacgtgtgtgtgtttttcctcctcttttggggcatgaactggctctaatatactggaatttatcaggtaaggcactacttaatatgacattggctgcttttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213618377|gb|DB969375.1|DB969375EST: AGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTG GCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTT
genomic: AGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttata ... tccattgcagGCATGGCTTTGTTGGGGTGTGATGTTATTGTGACAGACCAAAAGGAGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACGGAATTGCAGAAAGGGAAAGTTTTCCCCAGCTAAACTTAAAGGAAAACGTGTAATTGAACTAGGAGCTGGCTGTGGTGTTTCTGGTATTGgtgagttataaaactattgttaaacatttgtttattgaatcaatttacttttcctatatgcacttcttgttgaaattggtctatctttaccctactttcagtacttaggttggtgggtgatgcctagtctgatttgcagttccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT