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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattttaaactgttgtgacactagtctctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttctttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG

Basic information

species Glycine max
transcript GLYMA12G08330.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 6
lower sequence: AT4G05420.1 (Arabidopsis thaliana), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtctctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattgttctttattg--atagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG---------
                                                     |    |  |   |  | | | |  | | || ||||||| |   ||| |  | |  |||  || |||     ||||   || ||||| | ||  | |||| || |||||||| ||||||||  | ||||| || ||||||||||||||||||||||| ||||| ||  | |||||||| || ||||| |         
---------------------------------------------------gtataacttctagacgaaatttgtgtgtttaaaaactgatctac-tatgttcatttggta--ttgtttc----tgatggcttattcttgaatgtaaaagCACGAGGAAGGTGCAATTGAGGAGCGGGCTCGGGATTACAATGCAAATTGGATGTCAGCGGTTGAGATACTCGATGATGATATTTACCTCGGTGCTGAGA

upper sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 3'ss of exon 18
gtaaattttaaactgttgtgacactagtctctgtctggttttgttaaatttcaactgttcttctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttggaatgataaattg-----ttctttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG---------
||||  |    |||  | |   | || || || | |  |||||  |     ||| | |     | | | | |||    | || |      ||| | | | ||   | |     || ||   | |||    ||||     || ||||||   ||||||| |||||||| ||||| ||  |||| ||||||||||||||||||||||||||||| ||||| ||  ||||||||||||| ||||| |         
gtaagat---gactaatcttcaagtaatccct-tgtccttttggcag----caagtatggcgttccctggagtt--aaaagagtgttgtgtttgtttgt-tactcttatcgtcttgttaatggatgtctgattggtcctttttttattttcagCATGAGGAAGGTGCCATTGAAGAGCGAGCCCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAGATTCTTGATGATGACATTTACCTTGGTGCTGAGA

upper sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S458_4V6.1 (Physcomitrella patens), 3'ss of exon 18
------------------------gtaaattt-taaactgttgtgacactagtctctgtctggttttgttaaatttcaactgttcttctgctt--agtgttttggatgaata-actgatttttgtatatataat-gagtacattcttttggaatgataaattgttctttat-tgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG---------
                         || ||    | |  |||||  || | |   || | |  | | |   ||  ||       | ||| |||  |   |||| || || |  |  |||| |   ||    ||| |  ||    ||   |  ||||||   | | || ||| ||| ||| |||||| ||||| || ||||| |||||||| ||||||||||| ||||||||| |||||||||| ||  | ||||| |||| |||||| |         
gttagtacttcccaaactactggaatatatcagcacaaagttgtttcatttggtcct-tttcctctagactaagctctttcccccatctactttcatcttttttgacgagttcaaggattatgaaatgaggaattgtttatcgcctgaagtgatgatattctttactgtatctgacagCCTGAAGAGGGTGCAATCGAGGAGAGAGCTCGAGACTACAATGCTAATTGGATGACAGCCGTTGAGATTTTGGATGACGACACATACCTGGGAGCAGAAA

upper sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 6
lower sequence: PP1S203_55V6.1 (Physcomitrella patens), 3'ss of exon 18
---------------------------gtaaattttaaactgttgtgacactagtctctgtc-tggttttgttaaatttcaactgttctt-ctgcttagtgttttggatgaataactgatttttgtatatataatgagtacattcttttg-gaatgataaattgttctttattga------tagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG---------
                            | |   | | | | ||      |     | |  | |||| | | |   || |  | ||  |   |||||    | ||   | |  |  |||       | |  |||| ||||  || |||   |  |||  || ||  ||  |||||       ||| |||||| || || |||||||| |||||||| ||||||||||| || |||||| |||| ||||| ||  | ||||| ||||  || ||||         
gtttgtagtttacaaattgctgattttatcaccataagattattacatttcatccttttaccctggtatgggttctttgcttccgtcttgattgctttccatcttttttaatcagttgaagaggtaagaagtaat-agtaggttgtttaatgcttgaagaaatgacctgcattgagtccggcagCCTGAAGAGGGAGCGATTGAGGAGAGAGCTCGAGACTACAATGCCAACTGGATGACAGCGGTTGAGATTCTGGATGACGACACTTATCTAGGGGCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtatatataatgagtacattcttttggaatgataaattgttctttattgatagCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCCGTTGAAATCGTTGATGATGACATATACCTAG
                                      ttgttcttt  CT-rich tract
                             aatgataaattgttct  TA-rich tract