Sequence
atgc intronic sequence ATGC exonic sequenceTGTTAGAATTTTTTCTCTTCCTGATCTGAGTCTCATCACAAAGGAACAATTAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggttttccttgagtcattttttgtacttgcttttatttttttgattctggcattctgctttcttactttatttctagtaagttctatttttgaagta...
Basic information
species | Glycine max |
transcript | GLYMA12G08330.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G08330.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 15
TGTTAGAATTTTTTCTCTTCCTGATCTGAGTCTCATCACAAAGGAACAATTAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgta-ggttttccttgagtcattttttgtacttgcttttatttttttgattctggcattctgctttcttactttatttctagtaagttctatttttgaagta
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TGTGAGGATTTTTGTGCTACCAGACTTGACTCTTATTACTAAGGAGGAACTAGGAGGAGAGATCATTCCCCGATCTGTTCTTCTTTGTGCATTTGAAGGGgtatgattttctttaaat--ttttgtggaatggccatcttgcttgttaatgtaacctttggttgccata--ttaataacagtgtattgcatttgtcacag-
upper sequence: GLYMA12G08330.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 15
TGTTAGAATTTTTTCTCTTCCTGATCTGAGTCTCATCACAAAGGAACAATTAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggttt-tccttgagtcattttttgtacttgctt-ttatttttttgattctggc--attctgctttc-ttactttatttctag---taagttctatttttgaagta
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TGTTAGGATATTTTCACTTCCTGACCTGAATCTCATCACAAAAGAGTATTTGGGTGGAGAGATAATACCTCGGTCCGTACTTCTGTGTTCCTTTGAAGGGgtatgcttgtacttgagatttcttcacttcttattccttatctatgagatttacgctaattctgctcaagttattttactcgaaaacataaatttttttt--------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566712|gb|AW234344.1|AW234344EST: TAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGG ATATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATG
genomic: TAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggttttc ... tatcctccagACATCGTACTTGCTATGTGCCCTCGGTGATGGCCATCTCTTAAACTTTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTAGAATTTTTTCTCTTCCTGATCTGAGTCTCATCACAAAGGAACAATTAGGAGGGGAGATCATACCTCGTTCTGTTCTTCTTTGTGCCTTTGAAGGGgtaggttttccttgagtcattttttgtacttgcttttatttttttgattctggcattctgctttcttactttatttctagtaagttctatttttgaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG