Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgcattacttttacactatgcacatattgttggattttattatgacaatacatattgagtttgcaattaaattgataattattgttacacttggacacagGTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGATGGCATATTACAGGAAGTAAAGCATGCCCAGCTAGAGTATGAGATTTCAT

Basic information

species Glycine max
transcript GLYMA12G08330.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G08330.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 3'ss of exon 13
------------------------------------------------------tgcattacttttacactatgcacatattgttggattttattatgacaatacatatt---gagtttgcaattaaattgataattattgttacacttggacacagGTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGATGGCATATTACAGGAAGTAAAGCATGCCCAGCTAGAGTATGAGATTTCAT
                                                      |  |||  |  |  |  | | |  ||   ||||| | | |    | |  |||   |   || |   || ||  |  |  | |  ||  |   ||||     ||||| | ||||| || ||||| |||||||||||||| || |||||||||||||| | |||   ||||||  | |||||||   | ||||| ||| |||| |
gtttgtatttcattctcgatttgatttagtagttttgtacctagctgctatctttatatttttcatggaagaggaatctaactttggagtgtctagacatacaacacgctttagaataaacatttgtagagtgactctttaatgtgcttg---ttagGTTCTTTTGGCGACTGGAGGTGGGCATTTGGTTTATCTAGAAATTGGAGATGGGAAATTGACGGAAGTGCAACATGCCCTTTTGGAGTACGAGGTTTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566712|gb|AW234344.1|AW234344
EST:     TAAATGTAGCTACGGCAAACGCTACCCAG                         GTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGAT
genomic: TAAATGTAGCTACGGCAAACGCTACCCAGgtgtgatttg ... ttggacacagGTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatacatattgagtttgcaattaaattgataattattgttacacttggacacagGTTTTGTTGGCCACAGGAGGAGGGCATTTGGTTTACCTTGAAATTGGAGATGGCATATTACAGGAAGTAAAGCATGCCCAGCTAGAGTATGAGATTTCAT
                        aattgat  putative branch site (score: 4)
              tttgcaattaaattga  TA-rich tract