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...ttcgttactaaagtttaaattggccattttagtttaatgcatatgtttacgaccaacctttagccttgaaactataactcgttgattttgtatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGATTTGCCCTCTATAAATTGATGGTTGACACCAGGAAGATTACTTGATGGA
species | Glycine max |
transcript | GLYMA12G08000.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CAAGTGCACAAGATGGCTATAAGTCAACTCAGCTATATGCTGTTCCAATG ATTGAAATAGAAAACATGACTTTTAGGATGCCTGGCTGTCATCGAGGTGGAEST: gi|58016356|gb|CX703098.1|CX703098
genomic: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATGgtgaatctaa ... tatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGA
EST: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATG ATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGAEST: gi|15812716|gb|BI784991.1|BI784991
genomic: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATGgtgaatctaa ... tatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGA
EST: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATG ATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGAEST: gi|151397388|gb|EV267261.1|EV267261
genomic: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATGgtgaatctaa ... tatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGA
EST: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATG ATTGAAATAGAAAACATGACTT
genomic: CAAGTGCACAAGATGGCTATGAGTCAACTCAGCTATATGCTGTTCCAATGgtgaatctaa ... tatctttcagATTGAAATAGAAAACATGACTT
tttacgaccaacctttagccttgaaactataactcgttgattttgtatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGATTTGCCCTCTATAAATTGATGGTTGACACCAGGAAGATTACTTGATGGA
tatctttc CT-rich tract
aaactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgttactaaagtttaaattggccattttagtttaatgcatatgtttacgaccaacctttagccttgaaactataactcgttgattttgtatctttcagATTGAAATAGAAAACATGACTTCTAGGATGCCTGGCTGTCATCGAGGTGGATTTGCCCTCTATAAATTGATGGTTGACACCAGGAAGATTACTTGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - -ggccatt
- - - - - - - - - - - - - - - - - - -tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgaa