1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcctctgcctctgccttctcctcttccatcctttctttgctttgaattggtattgatttatttgtcttaatcttctggcttcatccttatctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAGTGGTGGAAACAAATGACAACAAAATACTTGTATTACAACGAAGTGATAA
species | Glycine max |
transcript | GLYMA12G08000.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAG ATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAGEST: gi|298179579|gb|HO028050.1|HO028050
genomic: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAGgtaaatcatt ... ctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAG
EST: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAG ATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAGEST: gi|151397388|gb|EV267261.1|EV267261
genomic: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAGgtaaatcatt ... ctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAG
EST: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAG ATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAG
genomic: GGGGACAAATTTAAGTCCTTTGTGGGAAAGGTTCCTGGTTCCATCAGAAGgtaaatcatt ... ctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAG
attggtattgatttatttgtcttaatcttctggcttcatccttatctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAGTGGTGGAAACAAATGACAACAAAATACTTGTATTACAACGAAGTGATAA
tcttaat putative branch site (score: 3)
tcttctggcttcatcc CT-rich tract
tattgatttatttgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctctgcctctgccttctcctcttccatcctttctttgctttgaattggtattgatttatttgtcttaatcttctggcttcatccttatctctcttcagATGATTCTGTTCTTTGTCAGCACACCTCCAATCCACTAGGAAATGGTGCAGTGGTGGAAACAAATGACAACAAAATACTTGTATTACAACGAAGTGATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- ctctgcc
- - - - - - - cttctcc
- - - - - - - - - - - - tccatcc
- - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttctg