1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgtgcaagttttgttctcgttgatggaacttgtatttgtaatgaataagctcccccctcctttctcttcagcttgtctttcaagatgaggtgcctgatgcaaataaaattacatgtttccttctgaaacaagtatttctgacattctaatcacttttgtattttggtttagaccagTGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCGTATGACCAGCTCATCCAGCAATATCAACAGCACCAA
species | Glycine max |
transcript | GLYMA12G07970.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACATGGATCAGATATTTTCCCATCTTCACATTCGACCTATCATTCACAG TGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTCEST: gi|7326887|gb|AW620685.1|AW620685
genomic: TACATGGATCAGATATTTTCCCATCTTCACATTCGACCTATCATTCACAGgtgtgcaagt ... tttagaccagTGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTC
EST: TACATGGATCAGATATTTTCCCATCTTCACATTCGACCTATCATTCACAGACCAG
genomic: TACATGGATCAGATATTTTCCCATCTTCACATTCGACCTATCATT--C--A-CAGgtgtgcaagt ... tttaga
tctgaaacaagtatttctgacattctaatcacttttgtattttggtttagaccagTGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCGTATGACCAGCTCATCCAGCAATATCAACAGCACCAA
ttctaat putative branch site (score: 2)
ttttgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcaagttttgttctcgttgatggaacttgtatttgtaatgaataagctcccccctcctttctcttcagcttgtctttcaagatgaggtgcctgatgcaaataaaattacatgtttccttctgaaacaagtatttctgacattctaatcacttttgtattttggtttagaccagTGGACCTCCTGGCATTGGATTAAGGCCGCTAAATTCTCCAAATACAGTTTCTGGTATGGGTTCGTATGACCAGCTCATCCAGCAATATCAACAGCACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA