1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattttaattagtttgctttagttttttgtattattggatgcttaaaagttactgtattgcatcatgtctaatattgtcttttacgtcatgttattttagGTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTGAGTACAAAGGAGGACCATTTTCAGCAAGGGATGATTTTTGGGTTGACCT
species | Glycine max |
transcript | GLYMA12G07970.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCCCGAACTCGGTCTTTGACTCAGAACTAGCTCTGATCTGCTTCTCAG GTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTGEST: gi|213613817|gb|DB961314.1|DB961314
genomic: GCTCCCGAACTCGGTCTTTGACTCAGAACTAGCTCTGATCTGCTTCTCAGgtactctctc ... gttattttagGTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTG
EST: GCTCCCGAACTCGGTCTTTGACTCAGAACTAGCTCTGATCTGCTTCTCAG GTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTG
genomic: GCTCCCGAACTCGGTCTTTGACTCAGAACTAGCTCTGATCTGCTTCTCAGgtactctctc ... gttattttagGTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTG
aaagttactgtattgcatcatgtctaatattgtcttttacgtcatgttattttagGTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTGAGTACAAAGGAGGACCATTTTCAGCAAGGGATGATTTTTGGGTTGACCT
gtctaat putative branch site (score: 3)
ttatttt putative PPT
taatattgtctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttaattagtttgctttagttttttgtattattggatgcttaaaagttactgtattgcatcatgtctaatattgtcttttacgtcatgttattttagGTTGTTATTTGGTTGCAAGGAAACACTTCTCAGATTGTTCTGAGGACTTTGAGTACAAAGGAGGACCATTTTCAGCAAGGGATGATTTTTGGGTTGACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - tgcttta
- - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - gttactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc