1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATGATGTGAATACCAATGACAGTTCACCTTTTGACATCAATGACTTCCCTCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGgtaagtgatgataaatgttttttttttatgttcgatatatttatgcaccttgtacaataaagaatgatatgatatatacaaaataaatttcag
species | Glycine max |
transcript | GLYMA12G07970.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGG GTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACCEST: gi|15664517|gb|BI701888.1|BI701888
genomic: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGgtaagtgatg ... taaatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAACC
EST: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGG GTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAAEST: gi|208273631|gb|GE068817.1|GE068817
genomic: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGgtaagtgatg ... taaatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTAGTCCCATTGTTCAACAAA
EST: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGG GTTCTTTACGAAAACAGGGTCTTGGAGTTA
genomic: TCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGgtaagtgatg ... taaatttcagGTTCTTTACGAAAACAGGGTCTTGGTGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGATGTGAATACCAATGACAGTTCACCTTTTGACATCAATGACTTCCCTCAACTGACAAGTCGTCCGAGTTCTGCTGGAGGGCCTCAAGGACAGTTGGgtaagtgatgataaatgttttttttttatgttcgatatatttatgcaccttgtacaataaagaatgatatgatatatacaaaataaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG