1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTGCCTCTCCTACCATAGGATCAAAGATATCTAGAGCAAGTTTAGCAACAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaactttatttgctttaaaaatagaaggaaagcatcttcatttttttaatgaggaaaaaatgctataaaaggtctttgttcattttgcag
species | Glycine max |
transcript | GLYMA10G32350.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACAEST: gi|6912766|gb|AW394354.1|AW394354
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
EST: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACACTGEST: gi|51336479|gb|CO980345.1|CO980345
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACACTG
EST: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAG GCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
genomic: CAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaact ... cattttgcagGCTTATTTCAGTGAAATCGACCACACATTGAACAAATTAACCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCCTCTCCTACCATAGGATCAAAGATATCTAGAGCAAGTTTAGCAACAGTTCGTTTAGAAGAAAATGATGTGGAAGAGCTTGAAATGTTACTCGAGgttataaactttatttgctttaaaaatagaaggaaagcatcttcatttttttaatgaggaaaaaatgctataaaaggtctttgttcattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT