1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctctagttcgattttgctcttgtttcctttcttccttttgtttcttaacttttttggttcagtcatgaactttaaaattattgtaattgtaatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGGGTTCAAAAG
species | Glycine max |
transcript | GLYMA10G32350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAG ATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAEST: gi|6912766|gb|AW394354.1|AW394354
genomic: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGgtacatatat ... taatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACA
EST: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAG ATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAEST: gi|192300565|gb|FG991517.1|FG991517
genomic: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGgtacatatat ... taatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACA
EST: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAG ATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACA
genomic: CAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGgtacatatat ... taatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACA
ttaacttttttggttcagtcatgaactttaaaattattgtaattgtaatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGGGTTCAAAAG
tcttaac putative branch site (score: 2)
atgaactttaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctctagttcgattttgctcttgtttcctttcttccttttgtttcttaacttttttggttcagtcatgaactttaaaattattgtaattgtaatctgcagATTAGTAGTCGAAATTTGGACAGAGTTCGAAAACTGAAGAGTGCAATGACAAGGCTGACTGCTAGGGTTCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - -tgtttcc
- - - - - - - - - - - - - - -ttcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaac