Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaactctctcattctgatcattaattacaaacaattttaatatatgcatgaagtgattctcaatctttatatttttcacatggggttactgtagGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAATCTCAGTATTCTTCACCCTATTTATAAACTTCTATTTCCTCACTATCGT

Basic information

species Glycine max
transcript GLYMA08G20190.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347092|gb|GR856762.1|GR856762
EST:     GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTG                         GTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA
genomic: GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTGgtctgaactc ... gttactgtagGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA
EST: gi|254329008|gb|GR833380.1|GR833380
EST:     GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTG                         GTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA
genomic: GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTGgtctgaactc ... gttactgtagGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA
EST: gi|17519182|gb|BM188224.1|BM188224
EST:     GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTG                         GTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA
genomic: GCTCATGTTATTGTGAATGACTCGTGTTATCATCAACTCATAAGCCACTGgtctgaactc ... gttactgtagGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatgcatgaagtgattctcaatctttatatttttcacatggggttactgtagGTTGAATACTCATGCCGTGATTGAGCCATTTGTCATAGCAACAAACAGGAATCTCAGTATTCTTCACCCTATTTATAAACTTCTATTTCCTCACTATCGT
 ttttaat  putative branch site (score: 3)
 attctcaatctttata  TA-rich tract