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...aaaaactgtgatagtattacttttaaacatatattgcatgctcaatcacaaaacaatcttaatatagtcttgaatttatgtatattttgaacttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTACGTCGATACCAACATTGGGAGCAGGCCAATCTGCGTTCACTATTCATTT
species | Glycine max |
transcript | GLYMA08G20190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATG GAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTAEST: gi|213613672|gb|DB963332.1|DB963332
genomic: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGgttagttctt ... acttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
EST: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATG GAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTAEST: gi|209726246|gb|BW680195.1|BW680195
genomic: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGgttagttctt ... acttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
EST: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATG GAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTAEST: gi|213619847|gb|DB969511.1|DB969511
genomic: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGgttagttctt ... acttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
EST: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATG GAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTAEST: gi|254332715|gb|GR846546.1|GR846546
genomic: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGgttagttctt ... acttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
EST: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATG GAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
genomic: CTTGGGTCGTTCTGTGTGTCTTCAGTTGATTAGTGCTACCAAGGCTGATGgttagttctt ... acttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTA
tcacaaaacaatcttaatatagtcttgaatttatgtatattttgaacttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTACGTCGATACCAACATTGGGAGCAGGCCAATCTGCGTTCACTATTCATTT
tcttaat putative branch site (score: 3)
cttttgt putative PPT
aatcttaatatagtct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaactgtgatagtattacttttaaacatatattgcatgctcaatcacaaaacaatcttaatatagtcttgaatttatgtatattttgaacttttgtagGAAATGGAAATGGGGTAGTTGGAAAGAAGACCTATTTGGAAGGTATTATTACGTCGATACCAACATTGGGAGCAGGCCAATCTGCGTTCACTATTCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -aactgtg
- - - - - - - - - - - - - - - - - - catgctc
- - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa