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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCAGAACACTGCTGGGGTTCAAGGACTCAACATTCTACCTGAGGATTTTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaactaatgttttaaatagcggtcgtggactgctatttaaaaccatgagtctaactaatgactgtctgcaactcctataatttccagcatgttatggattgctaatgttgtgttgctatgtctctag

Basic information

species Glycine max
transcript GLYMA08G20080.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20080.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv12s0035g00320.t01 (Vitis vinifera), 5'ss of exon 2
TGCTCAGAACACTGCTGGGGTTCAAGGACTCAACATTCTACCTGAGGATTTTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaactaatgttttaaatagcggtcgtggactgctatttaaaaccatgagtctaactaatgactgtctgcaactcctataatttccagcatgtt-atggattgctaatgttgtgttgctatgtctctag
                         ||  | |||||| | |||||||||||||| ||||| || ||| | |||||||||||||| ||||||||| |||| ||||||| ||      |||  | |  |  | ||| | | |  ||    ||       | || || |   ||| ||  | | || |  |||| | | |||| ||       ||||                     
-------------------------GGTGTAAACATTGTGCCTGAGGATTTTGTTGCAGAGCAATTGAAATCTGTGCTCTCTGACATGCATGTTGATGTGgtaagtcaaa-----atttgtagttactat-gtgtattaccttt----act-----cccaattagt--ttgtatgaca-tgctctgttttctaacttgtttatattccaataatacca-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701576|gb|BW667356.1|BW667356
EST:     TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTC                         GTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
genomic: TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaa ... atgtctctagGTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
EST: gi|213613527|gb|DB963257.1|DB963257
EST:     TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTC                         GTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
genomic: TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaa ... atgtctctagGTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
EST: gi|4313338|gb|AI460457.1|AI460457
EST:     NTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTC                         GTCAAAACAGGCATGCTGCCCTCT
genomic: TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaa ... atgtctctagGTCAAAACAGGCATGCTGCCCTCT
EST: gi|192305914|gb|FG995464.1|FG995464
EST:     TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTC                         GTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
genomic: TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaa ... atgtctctagGTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
EST: gi|209715281|gb|BW654168.1|BW654168
EST:     TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTC                         GTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG
genomic: TTGTGGCAGACCAGTTGCACTCTGTGCTCTCTGATATGCATGTTCATGTCgtaagtctaa ... atgtctctagGTCAAAACAGGCATGCTGCCCTCTCTTAATATAGTCAAGGTCCTTTGTCAG