1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGATATAAGTCAGAAGATGATTAATTATGCGGTCTGAAGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaaggattcattcaccacttcactttttttctcatgaatataatatcatgtcactcattcaacaataacaaacccaaaatcattgaacaacacaagataagatttaagatagataattcataacttgtcgtcggtacgtgtatgaaacatgtgttccttgtcatggcag
species | Glycine max |
transcript | GLYMA08G20080.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGEST: gi|209701576|gb|BW667356.1|BW667356
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGEST: gi|213613527|gb|DB963257.1|DB963257
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: AGTTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGEST: gi|4313338|gb|AI460457.1|AI460457
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: TGCGGTGCTCA-CCTCAGCCTCAG-CT-AGEST: gi|192305914|gb|FG995464.1|FG995464
genomic: TGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCGGCCTCAGCCTCAGCCTCAGEST: gi|193355577|gb|FK323396.1|FK323396
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCGGEST: gi|209715281|gb|BW654168.1|BW654168
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
EST: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAG
genomic: AGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaagg ...
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGATATAAGTCAGAAGATGATTAATTATGCGGTCTGAAGCTAATGGCGACTCAGCTGCTTTGTATGTGTTGCGGTGCTCAGCCTCAGCCTCAGCCTCAGgtaagtaaggattcattcaccacttcactttttttctcatgaatataatatcatgtcactcattcaacaataacaaacccaaaatcattgaacaacacaagataagatttaagatagataattcataacttgtcgtcggtacgtgtatgaaacatgtgttccttgtcatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT