1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aactgagaatgcttcatataataaagatactgcaatttttttcatttgttatcagttcagtgactaaataaaagtttctaatgctttcctttctttgtagGAACTCTGCTCCTCTTTAATATCCCACCTTGGTCAGGTAAATGCTTATTCAGAGGCATTCTCTGTTTACAATATGTTGAAATATAGCAAGAGAACAATGT
species | Glycine max |
transcript | GLYMA08G19900.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
ttgttatcagttcagtgactaaataaaagtttctaatgctttcctttctttgtagGAACTCTGCTCCTCTTTAATATCCCACCTTGGTCAGGTAAATGCTTATTCAGAGGCATTCTCTGTTTACAATATGTTGAAATATAGCAAGAGAACAATGT
ttctaat putative branch site (score: 2)
tttctaatgctttcct CT-rich tract
taaataaaagtttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgagaatgcttcatataataaagatactgcaatttttttcatttgttatcagttcagtgactaaataaaagtttctaatgctttcctttctttgtagGAACTCTGCTCCTCTTTAATATCCCACCTTGGTCAGGTAAATGCTTATTCAGAGGCATTCTCTGTTTACAATATGTTGAAATATAGCAAGAGAACAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - gaatgct
- - - - - - - - - - - - - -tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa