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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcttactagttacctattattcgttcttccttcaacattttcacactctataatttgttctagtaattttcagGGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAG

Basic information

species Glycine max
transcript GLYMA08G19900.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20075640|gb|BQ094423.1|BQ094423
EST:     GCCACACTCGAAGTTCGGAACGCTTCTGATTTGGCCTCAGCTCTCGCAAG                         GGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTT
genomic: GCCACACTCGAAGTTCGGAACGCTTCTGATTTGGCCTCAGCTCTCGCAAGgtactcttac ... taattttcagGGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTT
EST: gi|24136778|gb|BU927288.1|BU927288
EST:     GCCACACTCGAAGTTCGGAACGCTTCTGATTTGGCCTCAGCTCTCGCAAG                         GGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTT
genomic: GCCACACTCGAAGTTCGGAACGCTTCTGATTTGGCCTCAGCTCTCGCAAGgtactcttac ... taattttcagGGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcgttcttccttcaacattttcacactctataatttgttctagtaattttcagGGTAGGAGACGCGTTGACGGTCAAAGACCTCAATGCCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAG
                                                ttttc  CT-rich tract
                              tataatttgttctagt  TA-rich tract