1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ataaatctcccgacatttctccctcaattgcacagcacatacatatacatacatgttttgttccataactttttatgatatattattattgcaattgcagCTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCCCATTACATAAGGTTCATGGCAAGTCATAATCTTGACGCTGCTAAGATGC
species | Glycine max |
transcript | GLYMA08G19900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAG CTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCCEST: gi|24136778|gb|BU927288.1|BU927288
genomic: CCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAGgtcagctgct ... gcaattgcagCTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCC
EST: CCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAG CTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCC
genomic: CCGCTTTGTATCACTTTAAAAAGTCAAACAAATTCAACCATATCTCTCAGgtcagctgct ... gcaattgcagCTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCC
tacatacatgttttgttccataactttttatgatatattattattgcaattgcagCTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCCCATTACATAAGGTTCATGGCAAGTCATAATCTTGACGCTGCTAAGATGC
ccataac putative branch site (score: 3)
ttttgttccataactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaatctcccgacatttctccctcaattgcacagcacatacatatacatacatgttttgttccataactttttatgatatattattattgcaattgcagCTATTTTCGTGGATGCAAGAGAACAACAAGCTTGATGCCTTGTCTTATTCCCATTACATAAGGTTCATGGCAAGTCATAATCTTGACGCTGCTAAGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - cccgaca
- - - - - - - - - ctccctc
- - - - - - - - - - - - - - tgcacag
- - - - - - - - - - - - - - - - - -cacatac
- - - - - - - - - - - - - - - - - - -catacat