Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCCCCAAAAATTGAATCCCTTGAGGTACAAGGCTGTAGTTGGATTAGGGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAGgtaattgaaattttaaagtcattcttgtatttattattattcataggccttatttttgttcccaagtacactactatgtaattgtctttttggtttagtgagcctaattttctctcttttcatgtcaattgtttccag

Basic information

species Glycine max
transcript GLYMA08G19820.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19820.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv12s0034g01430.t01 (Vitis vinifera), 5'ss of exon 1
TCCTCCCCAAAAATTGAATCCCTTGAGGTACAAGGCTGTAGTTGGATTAGGGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAGgtaattgaaattttaaagtcattcttgtatttattattattcataggccttattt--ttgttcccaagtacactactatgtaattgtctttttggtttagtgagcc-taattttctctcttttcatgtcaattgtttccag
   ||||||||| |||||  ||||||||||||||| |||||||||||| | |||| ||| || ||| | || |||||||| || ||  |||||| ||| |||||   |  || | |  | | |||   | | | ||||  ||    |  || | |   | |||   | |     |  |    |      |  || |      | |  |||||   | |||| |  || ||| |  || |||
ATTTCCCCAAAACTTGAACTCCTTGAGGTACAAGGTTGTAGTTGGATTCGAGTTCGTGAGACTCAGTACTTAAGGAATCTCTCCATTGCCAATAATGCTGgtaa--aattttattagattactctgtcagtaaatatttctctccagtattctctagctcttcttgactgagaaaaaaaaggaaaacactgctgataattcaaactgtaattaattttcttgttgtgacaaattgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021949|gb|CX708690.1|CX708690
EST:     GGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAG                         GGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGT
genomic: GGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAGgtaattgaaa ... ttgtttccagGGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGT