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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgaaattttaaagtcattcttgtatttattattattcataggccttatttttgttcccaagtacactactatgtaattgtctttttggtttagtgagcctaattttctctcttttcatgtcaattgtttccagGGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGTCTATGAGGGGGATCCAGTGGTGCTGGAATGCAATATGCAAAATGCTGAA

Basic information

species Glycine max
transcript GLYMA08G19820.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021949|gb|CX708690.1|CX708690
EST:     GGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAG                         GGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGT
genomic: GGTTCCTGAAACCCAGCATTTGAGGAATCTTTCAATATCCAATAGTGCAGgtaattgaaa ... ttgtttccagGGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttggtttagtgagcctaattttctctcttttcatgtcaattgtttccagGGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGTCTATGAGGGGGATCCAGTGGTGCTGGAATGCAATATGCAAAATGCTGAA
                  gcctaat  putative branch site (score: 3)
                                             ttgtttcc  putative PPT
                     taattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgaaattttaaagtcattcttgtatttattattattcataggccttatttttgttcccaagtacactactatgtaattgtctttttggtttagtgagcctaattttctctcttttcatgtcaattgtttccagGGAGAGTGTATATGGTTGATTTTGGAAAACTTCCAGCTCTGGTGTTCCTGTCTATGAGGGGGATCCAGTGGTGCTGGAATGCAATATGCAAAATGCTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG