Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaccagccagattacttgaagagaatatcttagttagatttatgtttattctttttagagaaagatgtttatgaaaccattggaccttttatctggtatagatatcaaatactcgttgtcatactttgtggtaacaattaatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCGTCTTACAGGGTTCCTATATGATGGCATTGTCAGCATTGCAATGCAGTA

Basic information

species Glycine max
transcript GLYMA08G19810.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19810.1 (Glycine max), 3'ss of exon 5
lower sequence: AT3G26070.1 (Arabidopsis thaliana), 3'ss of exon 5
gtgagttaccagccagattacttgaagagaatatcttagttagatttatgtttattctttttagagaaagatgtttatgaaaccattggaccttttatctggtatagatatcaaatactcgttgtcatactttgtggtaacaat-taatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCGTCTTACAGGGTTCCTATATGATGGCATTGTCAGCATTGCAATGCAGTA-
                                                         ||  ||| ||| |||  || | |     ||  |  |||||||    | | ||||| || |  ||||   |||  |||    ||   | |  | |  |||||||||||||||||| ||||| |||||||| || ||||| ||| | |||||  ||||  |  | ||| | ||||   |        || | |  |    | 
--------------------------------------------------------gttagtagtgaatgatagttttcat----tttcatgttttatc-aaca-aaatatccaaaa--cgtttgaata--ttgaaacaatgttgtttttttgcagGTTATCAAGAGGTGACAAAGGGAACTTGTTTATATTGAAGATGTTTGATCCCACTTATCGAATCCCTCTTTGATC-TACCAAACAAATGGTACCGAGCCAT

upper sequence: GLYMA08G19810.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0034g01210.t01 (Vitis vinifera), 3'ss of exon 5
gtgagttaccagccagattacttgaagagaatatcttagttagatttatgtttattctt--tttagagaaagatgtttatgaa-accattggaccttttatctggtatagatatcaaatactcgttgtcatactttgtggtaacaattaatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCGTCTTACAGGGTTCCTATATGATGGCATTGTCAGCATTGCAATGCAGTA---
                                         |  |   |||| ||| ||  ||   ||    || | |||    ||||||   || ||||   | || ||| ||                |||     |||     |     |  |||  |||||||||| || ||||||||||||||||||||||||||| | || || || ||| |||||||| ||| |||    ||   | ||  || ||||| |   
-----------------------------------------aagtacttgttgatttttcattcgaagttctatatctatatctaccattactccatttaag-gatacagaaatt---------------tacaaaagggtggtt-tctccattgcagAGTATCAAGAGGCGACAAAGGAAACTTGTTCATCTTGAAAATGATCGACCCATCCTACCGGGTTCCTGTATAATGA---TGCTTGAATCACACTGCAGAAGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20449275|gb|BQ253399.1|BQ253399
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GTTATCAAGAGG
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatgtaacagGTTATCAAGAGG
EST: gi|192298088|gb|FG991368.1|FG991368
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC
EST: gi|151393651|gb|EV263526.1|EV263526
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GTTATCAAGAAGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC
EST: gi|26057243|gb|CA800157.1|CA800157
EST:     GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG                         GTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC
genomic: GGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCGgtgagttacc ... aatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtatagatatcaaatactcgttgtcatactttgtggtaacaattaatgtaacagGTTATCAAGAGGTGATAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCGTCTTACAGGGTTCCTATATGATGGCATTGTCAGCATTGCAATGCAGTA
                                     taacaattaatgtaa  TA-rich tract