Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agataagatgattctctaatagattaaaaaaaaacaatttttctccaccttgccatgtcccattttttgcctgctaactttttcaataatgcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG

Basic information

species Glycine max
transcript GLYMA08G19810.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19810.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv12s0034g01210.t01 (Vitis vinifera), 3'ss of exon 2
agataagatgattctctaatagattaaaaaaaaacaatttttct---ccaccttgccatgtcccattttt--tgcctgctaactttttc--aataatgcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG
       |||  |   |||  |||| |||||| |   |||| ||   | |  ||||  | |||  | ||   |  || |||| |        ||||       ||||||||| || || || || ||| ||||||| || |||||||||||||| |||||||||||||| || || ||||||||||  |||||||||||||||
-------atgcatgaataaatgattcaaaaaataatgttttactggactattttgctttttcctttcttaaataacttctaattacccacagataacattgtgacagAGACCCAAATTCTTAAGGTCAATTGCAAACTACCAAGCAATCAATGTGGATACTCTAAGGGCTCAGAACATGGAATCTTTTCCATTCTTCAACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204643|gb|BE330867.1|BE330867
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|7691813|gb|AW759933.1|AW759933
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAGATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|14258815|gb|BG881723.1|BG881723
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|10233924|gb|BE802812.1|BE802812
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|20449275|gb|BQ253399.1|BQ253399
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|192298088|gb|FG991368.1|FG991368
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|21889067|gb|BQ742280.1|BQ742280
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|17023832|gb|BM094866.1|BM094866
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|16348015|gb|BI973610.1|BI973610
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|7926228|gb|AW832254.1|AW832254
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|14009118|gb|BG725722.1|BG725722
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|298174011|gb|HO017347.1|HO017347
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|151393651|gb|EV263526.1|EV263526
EST:     GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: GAAAATGGGAGCTTATATACACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
EST: gi|26057243|gb|CA800157.1|CA800157
EST:     CACTACCTCGCAGTCAATCTTACAAACCAAG                         AGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT
genomic: CACTACCTCGCAGTCAATCTTACAAACCAAGgtaaacaatt ... gcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccttgccatgtcccattttttgcctgctaactttttcaataatgcaactacagAGACCAAAGTTGTTGAGATCAGTTGCAAATTATCAAGCAATCAATGTCGATACTCTAAGGGCCCAAAATATGGAATCTTGGCCATTCTTCAACCAG
                          tgctaac  putative branch site (score: 1)
                             taactttttcaataat  TA-rich tract