1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aactgcttaagaactagtgagtaatgtgtatgtgtgtctatgcactggttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
species | Glycine max |
transcript | GLYMA08G19810.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|192298088|gb|FG991368.1|FG991368
genomic: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|17023832|gb|BM094866.1|BM094866
genomic: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCACCTGEST: gi|151393651|gb|EV263526.1|EV263526
genomic: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCACCTG
EST: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATEST: gi|26057243|gb|CA800157.1|CA800157
genomic: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
EST: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATT ATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
genomic: ATCCAAGGAAAGTAGCTGTAAAATTTGATACTTTCAAAATTGGAGGCATTgtaagtattc ... acacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATAT
tggttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
aataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactgcttaagaactagtgagtaatgtgtatgtgtgtctatgcactggttgaataatagcttgtgagcatgatctattccatcataatgtacacatgcagATACCTATTAAAGCACCTGGAAGAGCTCGTGGGGAACTGGAAATAACATATTTGGACGAAGAACTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
-actgctt
- - - - - - - - - - - - - - - tgtgtgt
- - - - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatga