Sequence
atgc intronic sequence ATGC exonic sequenceAAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgcttaacttgctcttgtcttctttgataattttaagtaactagtaactactagattatgattgtggcaagttggcagcattcaaagttcaaaa...
Basic information
species | Glycine max |
transcript | GLYMA08G19800.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G19800.2 (Glycine max), 5'ss of exon 9
lower sequence: AT1G71240.1 (Arabidopsis thaliana), 5'ss of exon 8
AAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgcttaacttgctcttgtcttctttgataattttaagt--aactagtaactactagattatgattgtggcaagttggcagcattcaaagttcaaaa
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AGAAACATGTAGACAAAAATACAAGGTGGTCGAAAAAACTCAAGCCACTATTGATGCTGCAACTATCAAAGGGATACCTAGTAACATTGACCTCTTTAAGgtaacactttttctccattgatagttttgctacaaacattgttttggacggtttcctaattcgtcatgttta-gacaacttt-catctcttgtgtcaatgga
upper sequence: GLYMA08G19800.2 (Glycine max), 5'ss of exon 9
lower sequence: Vv12s0034g01220.t01 (Vitis vinifera), 5'ss of exon 8
AAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgcttaacttgctcttgtcttctttgataattttaagtaactagtaactactagattatgattgtggcaagttggcagcattcaaagttcaaaa---
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GGTAACATGCAAACATAAATACCAAGTGGTTGAGAAAACACAAGCCACAATTGATGCAGCAATGCTTAAAGGGATACCCAGCAACATTGACCTTTTCAAGgttgggccgtca--tttcatttatttttattttcaatcctaatttcttttctttttcccttttttgttgttgtttagttt-tttcattaagtgtttctagtgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16347725|gb|BI973320.1|BI973320EST: TTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAG GAGCTAGTGTTTCCTTTCACCTTGATTGTCAAAAACTTTGAAAAGCTTAGG
genomic: TTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgct ... tcctatgcagGAGCTAGTGTTTCCTTTCACCTTGATTGTCAAAAACTTTGAAAAGCTTAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAACAAGCAAACATAAGTACCACATTGTGGAGAAGACTCAAGCCACCATTGATGCTGCAACTCTACAAGGCATACCCAGCAACATTGATCTTTTCAAGgttggatgcttaacttgctcttgtcttctttgataattttaagtaactagtaactactagattatgattgtggcaagttggcagcattcaaagttcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC