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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagcattcaaccatgttctttaatatgatctgacactttgggagggttgtttatattattttgatctttattcctgtcttagaggatgtttaatatgattacctttatcagATAACTACTGAGGTTGCACTGGTGCTGATATCTTCTGCAACCATTCTCCTCATTGTCCCGTTCAAGTACATTTTTTCCTTTCTTCTCTTTGATATGTTCA

Basic information

species Glycine max
transcript GLYMA08G19800.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347725|gb|BI973320.1|BI973320
EST:     ATGTCTCCCTCCTCAAAATACGTTCTATTTTACTTTCTGGCCATCCACAG                         ATAACTACTGAGGTT
genomic: ATGTCTCCCTCCTCAAAATACGTTCTATTTTACTTTCTGGCCATCCACAGgtatgagcat ... cctttatcagATAACTACTGAGGTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttgatctttattcctgtcttagaggatgtttaatatgattacctttatcagATAACTACTGAGGTTGCACTGGTGCTGATATCTTCTGCAACCATTCTCCTCATTGTCCCGTTCAAGTACATTTTTTCCTTTCTTCTCTTTGATATGTTCA
                               gtttaat  putative branch site (score: 4)
                                          ttaccttt  putative PPT
                             atgtttaatatgatta  TA-rich tract