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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCACCTTGATTGTCAAAAACTTTGAAAAGCTTAGGCACTGGGAGGAGCCACACTTGACTGTTGCATTTCTTGGACTTACCTTTACAATTATTTATAGgtagattctcacctcatttttttattatgctattgatgattgttgtcttcccagtcacaagtcagcccaatgatcatatggcagtagctagctttctatt...

Basic information

species Glycine max
transcript GLYMA08G19800.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19800.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0034g01220.t01 (Vitis vinifera), 5'ss of exon 9
CTTTCACCTTGATTGTCAAAAACTTTGAAAAGCTTAGGCACTGGGAGGAGCCACACTTGACTGTTGCATTTCTTGGACTTACCTTTACAATTATTTATAGgtagattctcacctcatttttttattatgctattgatgattgttgtcttcccagtcacaagtc----agcccaatgatcatatggcagtagctagctttctatt
|||| ||  | | || ||| || |||||||| ||||||| |||||||||||| |||||||| ||  | ||||||| | || | | |||| |||||   ||||||||| | |   || | || | |      |||  || ||||   |      ||    | |     |   ||| | | | || |   |     | | | |   
CTTTGACTGTCACTGCCAAGAATTTTGAAAAACTTAGGCGCTGGGAGGAGCCGCACTTGACCGTCTCCTTTCTTGCATTTGCATATACACTTATTGTCAGgtagattattatgacaatgttgtttggaagaatttttg-ttgtatacagtttggttttgaattcctgaattcaa-gtttacatagtgctcaggtgatgtttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16347725|gb|BI973320.1|BI973320
EST:     CCACACTTGACTGTTGCATTTCTTGGACTTACCTTTACAATTATTTATAG                         AAACCTGCTGTCATATATGTTTCCCGTGATGTTGATGATTTTGGCAGTTGG
genomic: CCACACTTGACTGTTGCATTTCTTGGACTTACCTTTACAATTATTTATAGgtagattctc ... gcctttccagAAACCTGCTGTCATATATGTTTCCCGTGATGTTGATGATTTTGGCAGTTGG