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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTGGGAGTGATGGATTTCTCTTCGGTGAGGGCTGCGTTGGATTCGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctatttctacctataatctatttgattgtgttgggctttattttttcattttccttagggtttgtgtttctgattacttcaattcag

Basic information

species Glycine max
transcript GLYMA08G19620.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192322362|gb|FK014603.1|FK014603
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|193352345|gb|FK314319.1|FK314319
EST:     GAAGTCGTACGACAAGGTTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAG
genomic: GAAGTCGTACGACAAGG-TTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAG
EST: gi|192297847|gb|FG988331.1|FG988331
EST:     CGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|33387927|gb|CA851134.1|CA851134
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58024842|gb|CX711583.1|CX711583
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|151407739|gb|EV277554.1|EV277554
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|8403794|gb|BE059361.1|BE059361
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|16347790|gb|BI973385.1|BI973385
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|298184345|gb|HO029558.1|HO029558
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAAGACGATTGACCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192294140|gb|FG986229.1|FG986229
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58020870|gb|CX707612.1|CX707612
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58020675|gb|CX707417.1|CX707417
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|254347672|gb|GR853921.1|GR853921
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|14258420|gb|BG881328.1|BG881328
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCANGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192334803|gb|FK025952.1|FK025952
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|9564042|gb|BE473551.1|BE473551
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|58017178|gb|CX703920.1|CX703920
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|298180054|gb|HO025269.1|HO025269
EST:     CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAG                         GTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
genomic: CGAAGTCGTACGACAAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC
EST: gi|192295778|gb|FG992604.1|FG992604
EST:     AAGGTTGCGGATGTGTGCGACAACTTGGTGCTTCAG                         GTTGCAGCTGAGGGCATTGCTCATCAGGACGATTGGCCCTACACAATTCAC
genomic: AAGGTTGCGGATGTGTGCGACAACTTGATGCTTCAGgcacctattt ... ttcaattcagGTTGCAGCTGAGGGCATTGCTTATCAGGACGATTGGCCCTACACAATTCAC